From: Whole genome transcriptome polymorphisms in Arabidopsis thaliana
 |  | Col > Van | Van > Col | Total |
---|---|---|---|---|
Annotation | Differential expression* | 1,626 | 923 | 2,549 |
 | Differential exonic splicing†| 287 | 190 | 477 |
 | Differential intronic splicing‡ | 239 | 220 | 459 |
HMM | Differential expression | 1,667 | 1,006 | 2,673 |
 | Differential splicing | 765 | 457 | 1,222 |
 | Un-annotated transcript | 37 | 48 | 85 |
 | Un-annotated 5' | 31 | 32 | 63 |
 | Un-annotated 3' | 30 | 16 | 46 |