Table 1 SeqFEATURE models built from PROSITE motifs
PROSITE pattern | Position(s) | Residue | Atom(s) |
|---|---|---|---|
2FE2S_FERREDOXIN | 1, 6, 9 | Cys | SG |
4FE4S_FERREDOXIN | 1, 3, 5, 7 | Cys | SG |
AA_TRANSFER_CLASS_1 | 4 | Lys | NZ |
AA_TRANSFER_CLASS_2 | 4 | Lys | NZ |
AA_TRANSFER_CLASS_3 | 19 | Lys | NZ |
ADH_SHORT | 3 | Tyr | OH |
ADH_ZINC | 2 | His | ND1, NE2 |
ADX | 6, 9 | Cys | SG |
ALDEHYDE_DEHYDR_CYS | 6 | Cys | SG |
ALDEHYDE_DEHYDR_GLU | 2 | Glu | OE1, OE2 |
ASP_PROTEASE | 4 | Asp | OD1, OD2 |
ASX_HYDROXYL | 3 | Asn | ND2, OD1 |
BETA_LACTAMASE_A | 5 | Ser | OG |
BETA_LACTAMASE_B_1 | 4, 6 | His | ND1, NE2 |
| Â | 8 | Asp | OD1, OD2 |
BPTI_KUNITZ_1 | 4, 8 | Cys | SG |
C_TYPE_LECTIN_1 | 1 | Cys | SG |
CARBOXYLESTERASE_B_1 | 11 | Ser | OG |
CARBOXYLESTERASE_B_2 | 3 | Cys | SG |
CHITINASE_18 | 9 | Glu | OE1, OE2 |
COPPER_BLUE | 11 | His | ND1, NE2 |
| Â | 7 | Cys | SG |
CYTOCHROME_P450 | 8 | Cys | SG |
EF_HAND | 1, 3, 5, 9 | Asp | OD1, OD2 |
| Â | 7, 12 | Tyr | OH |
| Â | 3, 5, 9 | Asn | ND2, OD1 |
| Â | 5, 9 | Ser | OG |
| Â | 7, 9 | Thr | OG1 |
| Â | 7 | Glu | OE1, OE2 |
| Â | 7 | Lys | NZ |
EGF_1 | 1, 3, 7 | Cys | SG |
EGF_2 | 1, 3, 8 | Cys | SG |
GLYCOSYL_HYDROL_F10 | 7 | Glu | OE1, OE2 |
GLYCOSYL_HYDROL_F5 | 7 | Glu | OE1, OE2 |
HIPIP | 1, 7 | Cys | SG |
HMA_1 | 5, 8 | Cys | SG |
IG_MHC | 3 | Cys | SG |
IMP_1 | 4 | Asp | OD1, OD2 |
KAZAL | 1, 3, 7, 9 | Cys | SG |
LIPASE_SER | 7 | Ser | OG |
LIPOYL | 9 | Lys | NZ |
PA2_HIS | 4 | His | ND1, NE2 |
PEROXIDASE_1 | 8 | His | ND1, NE2 |
PEROXIDASE_2 | 8 | His | ND1, NE2 |
PHOSPHOPANTETHEINE | 6 | Ser | OG |
PROTEIN_KINASE_ST | 5 | Asp | OD1, OD2 |
PTS_HPR_SER | 5 | Ser | OG |
RNASE_T2_1 | 4 | His | ND1, NE2 |
SHIGA_RICIN | 5 | Glu | OE1, OE2 |
| Â | 8 | Arg | NE, NH1, NH2 |
SMALL_CYTOKINES_CC | 1, 2, 11, 17 | Cys | SG |
SNAKE_TOXIN | 2, 4, 7, 8 | Cys | SG |
SUBTILASE_ASP | 5 | Asp | OD1, OD2 |
THIOL_PROTEASE_ASN | 6 | Asn | ND2, OD1 |
THIOL_PROTEASE_HIS | 3 | His | ND1, NE2 |
THIOREDOXIN | 8, 11 | Cys | SG |
TRYPSIN_HIS | 5 | His | ND1, NE2 |
TRYPSIN_SER | 6 | Ser | OG |
TYR_PHOSPHATASE_1 | 3 | Cys | SG |
UBIQUITIN_CONJUGAT_1 | 10 | Cys | SG |
ZINC_FINGER_C2H2_1 | 1, 3 | Cys | SG |
| Â | 7, 9 | His | ND1, NE2 |
ZINC_PROTEASE | 3, 7 | His | ND1, NE2 |
| Â | 4 | Glu | OE1, OE2 |