From: Identification of novel stem cell markers using gap analysis of gene expression data
Ref. | Cellular type | Gene name | Entrez Gene | Probe set polled | Pattern | Score | D |
---|---|---|---|---|---|---|---|
[74] | Differentiated retinal | 309L | ? | - | - | - | - |
 |  | Rho1D4 (rhodopsin) | ? | - | - | - | - |
 |  | D2P4 (rhodopsin) | ? | - | - | - | - |
 |  | CHX10 | Chx10 | 1419628_at.A | Not found | Not found |  |
 |  | PKC | a | - | - | - | - |
 |  | ROM-1 | Rom1 | 1448996_at.A | 879 | 0.942 |  |
 | Photoreceptor specific homeobox | Crx | Crx | 1418705_at.A | Not found | Not found |  |
 | Muller glia | 10E4 | ? | - | - | - | - |
[75] | Human central nervous system | CD24-/lo | CD24a | 1416034_at.A | 573 | 0.987 | 2 |
 |  | CD34- | CD34 | 1416072_at.A | 72 | 0.990 | 2 |
 |  | CD45- | Ptprc | 1422124_a_at.A | 427 | 0.987 |  |
 | Human neuronal lineage | N-CAM | Ncam1 | 1426864_a_at.A | 318 | 1.000 |  |
 | Neural | CD133 | Prom1 | 1419700_a_at.A | 573 | 0.930 | 2 |
 | Hematopoietic | CD133 | Prom1 | 1419700_a_at.A | 573 | 0.930 | 2 |
[76] | Proliferating neural | Ki-67 | Mki67 | 1426817_at.A | 8 | 0.991 | Â |
[77] | Trophoblast | Cdx2 | Cdx2 | 1422074_at.A | Not found | Not found | Â |
 | Ectoderm | Fgf5 | Fgf5 | 1438883_at.B | 442 | 1.000 |  |
 | Neuroectoderm | Isl1 | Isl1 | 1422720_at.A | 83 | 0.931 |  |
 | Pluripotent stem cell | Nanog | Nanog | 1429388_at.A | 390 | 0.947 |  |
 |  | Oct3/4 | Pou5f1 | 1417945_at.A | 151 | 1.000 |  |
 |  | Rex1 | Zfp42 | 1418362_at.A | 547 | 0.964 |  |
 | Mesoderm | Brachyury | T | 1419304_at.A | 232 | 0.938 |  |
[78] | Neural stem cell | Hu | ? | - | - | - | - |
 |  | Neuralstemmin | ? | - | - | - | - |
 |  | ABCG2 | Abcg2 | 1422906_at.A | Not found | Not found | 3 |
 |  | LeX/SSEA-1 | Fut4 | 1455843_at.B | 771 | 0.924 |  |
 |  | Musashi (Msi1) | Msi1 | 1421409_at.A | Not found | Not found | 2 |
 |  | Sox-1 | Sox1 | 1438729_at.B | 542 | 0.958 |  |
 |  | Sox-2 | Sox2 | 1416967_at.A | 71 | 0.986 |  |
[79] | Muscle specific | MCK (muscle creatine kinase) | Ckm | 1417614_at.A | 104 | 1.000 | Â |
 |  | MHC (myosin heavy chain) | Myh4 | 1427026_at.A | Not found | Not found |  |
 | Myofiber sarcolemma | Dystrophin | Dmd | 1417307_at.A | 835 | 0.958 |  |
 | Basal lamina | Laminin | a | - | - | - | - |
 | Myogenic lineage | Myf5 | Myf5 | 1420757_at.A | Not found | Not found |  |
 |  | MyoD | Myod1 | 1418420_at.A | 32 | 1.000 |  |
 | Late myogenic lineage | MRF4 | Myf6 | 1419150_at.A | Not found | Not found |  |
 |  | Myogenin | Myog | 1419391_at.A | 104 | 1.000 |  |
 | Satellite cells | Pax7 | Pax7 | 1452510_at.A | Not found | Not found |  |
[80] | Neural restricted precursors | MAP2 | Mtap2 | 1434194_at.B | 108 | 1.000 | 2 |
 |  | Beta3 tubulin | Tubb3 | 1415978_at.A | Not found | Not found |  |
[81] | SKP | Fibronectin | Fn1 | 1426642_at.A | 681 | 0.984 | Â |
 |  | GAP43 | Gap43 | 1423537_at.A | 363 | 0.959 |  |
 |  | MAP2 | Mtap2 | 1434194_At.B | 108 | 1.000 | 2 |
 |  | Nestin | Nes | 1449022_at.A | 73 | 0.980 | 2 |
 |  | p75NTR | Ngfr | 1421241_at.A | Not found | Not found |  |
 |  | Vimentin | Vim | 1450641_at.A | 770 | 0.977 |  |
[82] | Hematopoietic stem cell | BCRP1 | Abcg2 | 1422906_at.A | Not found | Not found | Â |
 | Epidermal side population | BCRP1 | Abcg2 | 1422906_at.A | Not found | Not found | 3 |
 |  | alpha6-integrin | Itga6 | 1422444_at.A | Not found | Not found | 2 |
 |  | beta1-integrin | Itgb1 | 1426918_at.A | 13 | 0.967 | 2 |
 |  | keratin 14 | Krt1-14 | 1460347_at.A | 386 | 0.983 |  |
 |  | Sca-1 | Ly6a | 1417185_at.A | 637 | 0.929 | 2 |
 |  | CD34- | CD34 | 1416072_at.A | 72 | 0.990 | 2 |
 |  | E-cadherin | Cdh1 | 1448261_at.A | 48 | 0.993 |  |
 |  | Keratin 19 | Krt1-19 | 1417156_at.A | 268 | 0.989 | 2 |
 |  | CD71- | Tfrc | 1452661_at.A | 845 | 0.958 |  |
[83] | Muller glia; retinal | Gln synthetase | Glul | 1426235_a_at.A | 573 | 0.901 | Â |
 | Retinal | syntaxin | a | - | - | - | - |
 |  | Pax6 | Pax6 | 1419271_at.A | 374 | 0.960 |  |
 |  | rhodopsin | Rho | 1425171_at.A | Not found |  |  |
[84] | Neural | (NeuN) Neuron specific protein | ? | - | - | - | - |
 |  | Neuron-specific enolase | Eno2 | 1418829_a_at.A | Not found | Not found | - |
 | Osteoblasts | Alkaline phosphatase | Akp2 | 1423611_at.A | Not found | Not found | - |
 |  | BMP2 | Bmp2 | 1423635_at.A | Not found | Not found | - |
 |  | BMP4 | Bmp4 | 1422912_at.A | Not found | Not found | - |
 |  | BMP Receptor 1 | Bmpr1a | 1425492_at.A | 581 | 0.939 |  |
 |  |  | Bmpr1b | 1437312_at.B | 446 | 0.917 |  |
 |  | BMP Receptor 2 | Bmpr2 | 1434310_at.B | 602 | 0.954 |  |
 |  | PTH receptor | Pthr2 | 1452129_at.A | Not found |  |  |
 |  | Type 1 collagen | a | - | - | - | - |
 |  | bone sialoprotein | Ibsp | 1417484_at.A | Not found |  |  |
 |  | PTH receptor | Pthr1 | 1417092_at.A | 368 | 0.964 |  |
 |  | RunX-1 | Runx1 | 1422865_at.A | 295 | 0.982 |  |
 |  | osteonectin | Sparc | 1448392_at.A | 581 | 1.000 |  |
 |  | osteopontin | spp1 | 1449254_at.A | 737 | 0.996 |  |
 | General stem cell factor receptor | CD117 | Kit | 1459588_at.B | 243 | 0.912 |  |
 | Muscle | merosin | Lama2 | 1426285_at.A | 799 | 0.986 |  |
 | Cartilage related extracellular matrix | aggrecan | Agc1 | 1449827_at.A | Not found | Not found | - |
 |  | collagen II | a | - | - | - | - |
 |  | collagen IV | a | - | - | - | - |
 |  | PRELP | Prelp | 1416322_at.A | 231 | 0.958 |  |
 | Adipose derived stem cell | CD49d+ | Itga4 | 1421194_at.A | Not found | Not found | - |
 |  | CD106- | ? | - | - | - | - |
[85] | Mammary stem cell | Bmi-1 | Bmi1 | Not on array | - | - | - |
 |  | p21 | Cdkn1a | 1424638_at.A | 400 | 0.967 |  |
 |  | CD49f | Itga6 | 1422444_at.A | Not found | Not found | 2 |
 |  | Cytokeratin 19 | Krt1-19 | 1417156_at.A | 268 | 0.989 | 2 |
 |  | Sca-1 | Ly6a | 1417185_at.A | 637 | 0.930 | 2 |
 |  | Musashi (Msi1) | Msi1 | 1421409_at.A | Not found | Not found | 2 |
 |  | Cytokeratin 5/6 | ? | - | - | - | - |
[86] | Neural enrichment | CD24 | CD24a | 1416034_at.A | 573 | 0.990 | 2 |
 | Skin | CD29 | Itgb1 | 1426918_at.A | 13 | 0.970 | 2 |
[87] | Neural | GFAP | Gfap | 1426508_at.A | 249 | 0.924 | Â |
 |  | Neurofilament | Nefl | 1426255_at.A | 151 | 0.935 |  |
 |  | Nestin | Nes | 1449022_at.A | 73 | 0.980 | 2 |
 | Photoreceptors | Recoverin | Rcvrn | 1450215_at.A | Not found | Not found | - |
 | Epithelial lineage | Cytokeratin (904-clone 34betaB4?) | a | - | - | - | - |
 |  | CK18 | Krt1-18 | 1448169_at.A | 83 | 0.917 |  |
 |  | AE1 | Slc4a1 | 1416464_at.A | 41 | 1.000 |  |
[88] | Epithelial lineage | AE3 | Slc4a3 | 1418485_at.A | 391 | 0.931 | Â |