Feature | PyCogent | HyPHY | P4 | BioPython | Mesquite | ARB | CIPRESa |
---|---|---|---|---|---|---|---|
Query remote database | Yes | No | No | Yes | Yes | Yes | No |
Control external | Yes | No | No | Yes | Yes | Yes | Yes |
Create novel substitution | Yes | Yes | Yes | No | Yes | No | No |
Novel sequence alignment | Yes | No | No | Yes | No | No | No |
Partition models | Yes | Yes | No | No | No | No | No |
Slice sequences | Yes | No | No | Yes | No | No | No |
Draw alignments | Yes | No | No | No | No | No | No |
Build phylogenetic trees | Yes | Yes | Yes | No | Yes | Yes | Yes |
Draw phylogenetic trees | Yes | Yes | Yes | No | Yes | Yes | Yes |
Visualization of model | Yes | Yes | No | No | Yes | No | No |
Parallel computation | Yes | Yes | No | Yes | No | No | Yes |
Customize parallelization | Yes | Yes | No | Yes | No | No | Yes |
Reconstruct ancestral | Yes | Yes | No | No | Yes | Yes | Yes |
Simulate sequences | Yes | Yes | Yes | No | Yes | No | Yes |
Graphical user interface | No | Yes | No | No | Yes | Yes | Yes |
Script based control | Yes | Yes | Yes | Yes | Yes | No | Yes |
Handle 3D structures | Yes | No | No | Yes | Yes | Yes | No |
Handling RNA secondary | Yes | No | No | No | No | Yes | No |