Table 1 The 50 genes targeted by the most miRNAs using PicTar target predictions
Gene symbol | No. of miRNAs targeting gene | Refseq ID | Entrez gene description |
|---|---|---|---|
ATXN1 | 65 | NM_000332 | Ataxin 1 |
CPEB4 | 63 | NM_030627 | Cytoplasmic polyadenylation element binding protein 4 |
MECP2 | 62 | NM_004992 | Methyl cpg binding protein 2 (Rett syndrome) |
OTUD4 | 61 | NM_199324 | OTU domain containing 4 |
OGT | 60 | NM_003605 | O-linked N-acetylglucosamine (glcnac) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) |
PURB | 60 | NM_033224 | Purine-rich element binding protein B |
EIF2C1 | 58 | NM_012199 | Eukaryotic translation initiation factor 2C, 1 |
CPEB2 | 54 | NM_182485 | Cytoplasmic polyadenylation element binding protein 2 |
PLAG1 | 53 | NM_002655 | Pleiomorphic adenoma gene 1 |
NOVA1 | 53 | NM_006489 | Neuro-oncological ventral antigen 1 |
DYRK1A | 52 | NM_101395 | Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A |
HIC2 | 49 | NM_015094 | Hypermethylated in cancer 2 |
RAP2C | 49 | NM_021183 | RAP2C, member of RAS oncogene family |
TRPS1 | 48 | NM_014112 | Trichorhinophalangeal syndrome I |
NARG1 | 48 | NM_057175 | NMDA receptor regulated 1 |
NLK | 47 | NM_016231 | Nemo like kinase |
BACH2 | 47 | NM_021813 | BTB and CNC homology 1, basic leucine zipper transcription factor 2 |
KLF12 | 47 | NM_007249 | Kruppel-like factor 12 |
QKI | 46 | NM_206853 | Quaking homolog, KH domain RNA binding (mouse) |
CPEB3 | 46 | NM_014912 | Cytoplasmic polyadenylation element binding protein 3 |
USP6 | 46 | NM_004505 | Ubiquitin specific peptidase 6 (Tre-2 oncogene) |
YTHDF3 | 45 | NM_152758 | YTH domain family, member 3 |
ESRRG | 45 | NM_206594 | Estrogen-related receptor gamma |
CCND2 | 44 | NM_001759 | Cyclin D2 |
CCNJ | 44 | NM_019084 | Cyclin J |
RSBN1 | 44 | NM_018364 | Round spermatid basic protein 1 |
NFAT5 | 44 | NM_173214 | Nuclear factor of activated T-cells 5, tonicity-responsive |
CAMTA1 | 44 | NM_015215 | Calmodulin binding transcription activator 1 |
CNOT6 | 43 | NM_015455 | CCR4-NOT transcription complex, subunit 6 |
E2F3 | 43 | NM_001949 | E2F transcription factor 3 |
CHES1 | 43 | NM_005197 | Checkpoint suppressor 1 |
ANK2 | 43 | NM_001148 | Ankyrin 2, neuronal |
MAP3K3 | 43 | NM_002401 | Mitogen-activated protein kinase kinase kinase 3 |
DNAJC13 | 42 | NM_015268 | Dnaj (Hsp40) homolog, subfamily C, member 13 |
MNT | 42 | NM_020310 | MAX binding protein |
PPARGC1A | 41 | NM_013261 | Peroxisome proliferative activated receptor, gamma, coactivator 1, alpha |
TRIM2 | 41 | NM_015271 | Tripartite motif-containing 2 |
ZNF238 | 41 | NM_006352 | Zinc finger protein 238 |
PAFAH1B1 | 41 | NM_000430 | Platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45 kDa |
HMGA2 | 41 | NM_003483 | High mobility group AT-hook 2 |
FNDC3B | 41 | NM_022763 | Fibronectin type III domain containing 3B |
FBXO33 | 40 | NM_203301 | F-box protein 33 |
STC1 | 40 | NM_003155 | Stanniocalcin 1 |
CPD | 40 | NM_001304 | Carboxypeptidase D |
CHD9 | 40 | NM_025134 | Chromodomain helicase DNA binding protein 9 |
KIAA0261 | 40 | NM_015045 | Kiaa0261 |
RNF38 | 40 | NM_022781 | Ring finger protein 38 |
BAZ2A | 39 | NM_013449 | Bromodomain adjacent to zinc finger domain, 2A |
CBFA2T3 | 39 | NM_175931 | Core-binding factor, runt domain, alpha subunit 2; translocated to, 3 |
FNDC3A | 39 | NM_014923 | Fibronectin type III domain containing 3A |