From: Statistical tools for synthesizing lists of differentially expressed features in related experiments
Parameters | Rules | q | R | CI 95 | O 11 | O 1+ | O +1 | FP (%) | TP (%) | FN (%) | TN (%) | Global error |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Independence case: n= 3000, common = 0, DE1 = 1000, DE2 = 800 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
   Independence: signal to noise |  | 0.55 | 1* | 0.98-1.02 | 0†| 0†| 0†| 0 | 0 | 0 | 3,000 (100.0) | 0 |
   ratio = 0.4‡ |  |  |  |  |  |  |  |  |  |  |  |  |
A: n = 3000, common = 700, DE1 = 1000, DE2 = 800 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
   Case A1: signal to noise ratio = 9.6‡ | Max | 0.01 | 2.60 | 2.50-2.72 | 619 | 975 | 730 | 4 (0.2) | 615 (87.8) | 85 (12.2) | 2,296 (99.8) | 89 |
 | Double | 0.06 | 2.04 | 1.97-2.19 | 676 | 1,095 | 877 | 29 (1.3) | 647 (92.4) | 53 (7.6) | 2,271 (98.7) | 82 |
 |  |  |  |  |  |  |  |  |  |  |  | Min§ = 81 |
   Case A2: signal to noise ratio = 1.6‡ | Max | 0.01 | 4.72 | 4.19-5.29 | 86 | 346 | 157 | 1 (0.0) | 85 (12.1) | 615 (87.9) | 2,299 (100.0) | 616 |
 | Double | 0.08 | 2.01 | 1.90-2.20 | 212 | 677 | 459 | 28 (1.2) | 184 (26.3) | 516 (73.7) | 2,272 (98.8) | 544 |
 |  |  |  |  |  |  |  |  |  |  |  | Min§ = 535 |
B: n = 3000, common = 200, DE1 = 700, DE2 = 500 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
   Case B1: signal to noise ratio = 9.6‡ | Max¶ | 0.01 | 1.72 | 1.58-1.86 | 185 | 691 | 467 | 8 (0.3) | 177 (88.5) | 23 (11.5) | 2,792 (99.7) | 31 |
 |  |  |  |  |  |  |  |  |  |  |  | Min§ = 31 |
   Case B2: signal to noise ratio = 1.6‡ | Max | 0.01 | 2.98 | 2.38-3.71 | 36 | 250 | 145 | 3 (0.1) | 33 (16.7) | 167 (83.3) | 2,797 (99.9) | 170 |
 | Double | 0.03 | 2.03 | 1.67-2.40 | 57 | 355 | 236 | 11 (0.4) | 46 (23.0) | 154 (77.1) | 2,789 (99.6) | 165 |
 |  |  |  |  |  |  |  |  |  |  |  | Min§ = 165 |
C: n = 3000, common = 100, DE1 = 500, DE2 = 400 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
   Case C1: signal to noise ratio = 9.6‡ | Max¶ | 0.01 | 1.48 | 1.30-1.67 | 95 | 500 | 383 | 7 (0.2) | 88 (88.4) | 12 (11.6) | 2,893 (99.8) | 19 |
 |  |  |  |  |  |  |  |  |  |  |  | Min§ = 19 |
   Case C2: signal to noise ratio = 1.6‡ | Max | 0.01 | 2.93 | 2.16-3.83 | 20 | 214 | 96 | 3 (0.1) | 17 (16.6) | 83 (83.4) | 2,897 (99.9) | 86 |
 | Double | 0.02 | 2.16 | 1.63-2.81 | 26 | 262 | 134 | 5 (0.2) | 21 (21.0) | 79 (79.0) | 2,895 (99.8) | 84 |
 |  |  |  |  |  |  |  |  |  |  |  | Min§ = 84 |