Table 4 Effect of self-definition keywords on LPI scores for individual protein examples from E. coli strain K12
From: DarkHorse: a method for genome-wide prediction of horizontal gene transfer
| Â | Â | Â | Self-definition keywords | |||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | K12 83333 316407 562 | Â | Â | Escherichia | Â | Â |
Query ID | Query annotation | Query GC% | Match species | LPI | e-value | Match species | LPI | e-value |
AAC74994 | Cytoplasmic alpha-amylase | 49 | Escherichia coli CFT073 | 0.993 | 0 | Shigella dysenteriae | 0.984 | 0 |
AAC75738 | Carbon source regulatory protein | 49 | Escherichia coli O157:H7 | 0.993 | 3e-26 | Shigella flexneri | 0.984 | 3e-25 |
AAC75802 | Conserved hypothetical protein | 43 | Geobacter sulfurreducens | 0.612 | 3e-138 | Geobacter sulfurreducens | 0.610 | 3e-138 |
AAC75097 | UDP-galactopyranose mutase | 35 | Psychromonas ingrahamii | 0.747 | 2e-149 | Psychromonas ingrahamii | 0.743 | 2e-149 |
AAC76015 | Glycolate oxidase subunit, FAD-linked | 56 | Escherichia coli 53638 | 0.993 | 0 | Pseudomonas syringae | 0.745 | 0 |