From: Responses of hyperthermophilic crenarchaea to UV irradiation
UV/control mRNA abundance ratio | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
S. solfataricus (minutes after UV irradiation) | S. acidocaldarius (minutes after UV irradiation) | ||||||||||
Process | Sso no. | Sac no. | Description | 30 | 60 | 90 | 120 | 30 | 60 | 90 | 120 |
DNA replication | 0257 | 0722 | Cdc6-1 | 0.99 | 0.84 | 0.37 | 0.53 | 1.11 | 0.74 | 0.69 | 0.65 |
0771 | 0903 | Cdc6-2 | 1.99 | 7.66 | 10.2 | 6.9 | 0.94 | 1.01 | 1.1 | 1.18 | |
2184 | 0001 | Cdc6-3 | 0.93 | 0.9 | 0.91 | 0.68 | 0.75 | 1.09 | 0.83 | 0.59 | |
0772 | 0901 | Gins23 | 1.01 | 0.57 | 0.67 | 0.55 | 1.08 | 0.79 | 0.71 | 0.78 | |
1049 | 1278 | Gins15 | 1.19 | 0.88 | - | - | 0.97 | 0.93 | 0.70 | 0.64 | |
0774 | 0900 | MCM | 0.98 | 0.68 | 0.86 | 0.77 | 1.01 | 0.78 | 0.82 | 0.7 | |
1048 | 1279 | Primase PriS | 1.51 | 0.97 | 1.14 | 1.02 | 0.91 | 0.76 | 0.82 | 0.64 | |
0557 | 1542 | Primase PriL | 1.03 | 0.76 | 0.77 | 0.72 | 1.18 | 1.28 | 1.05 | 1.04 | |
0552 | 1537 | DpoI | 1.04 | 0.71 | 1.11 | 0.99 | 1.01 | 0.8 | 0.63 | 0.63 | |
1459 | 2156 | DpoII | 1.28 | 1.76 | 4.63 | 2.76 | 2.95 | 3.13 | 5.06 | 4.9 | |
8124 | DpoII | 1.52 | 2.14 | 2.86 | 1.95 | - | - | - | - | ||
0081 | 0074 | DpoIII | 1.13 | 0.97 | 0.83 | 0.73 | 1.01 | 0.56 | 0.44 | 0.36 | |
2448 | 0554 | DpoIV | 1.28 | 1.01 | - | - | 1.01 | 1.08 | 0.88 | 0.89 | |
2498 | 1112 | Rib red nrdB | 1.14 | 1.73 | 2.62 | 2.47 | 1.47 | 1.03 | 1.10 | 0.94 | |
0929 | 1353 | Rib red nrdJ | 0.86 | 0.72 | 1.45 | 0.83 | 1.05 | 1.40 | 1.90 | 1.41 | |
DNA repair (selected) | 0729 | 0604 | XPF | 1.17 | 1.26 | 1.1 | 1.15 | 1.18 | 1.16 | 1.05 | 1.02 |
0473 | 1657 | XPB2 | 1.43 | 1.13 | 1.17 | 1.08 | 1.07 | 0.98 | 0.95 | 0.8 | |
0179 | 0775 | Fen1 | 1.27 | 0.84 | 1.18 | 0.93 | 0.92 | 0.87 | 0.62 | 0.61 | |
0313 | 0192 | XPD | 1.44 | 1.18 | 1.28 | 1.43 | 0.98 | 0.73 | 0.95 | 0.93 | |
250 | 0715 | RadA | 1.03 | 0.97 | 1.14 | 0.87 | 0.87 | 1.71 | 1.05 | 2.29 | |
0575 | 1558 | HJC | 1.39 | 1.1 | 1.4 | 1.28 | 1.03 | 1.05 | 1.06 | 1.12 | |
2250 | 0052 | Mre11 | 0.84 | 0.95 | 1.69 | 1.19 | 0.96 | 0.92 | 0.97 | 0.88 | |
2251 | 0053 | herA | 0.97 | 1.06 | 2.11 | 1.4 | 1.06 | 1.11 | 0.9 | 0.71 | |
0116 | 1497 | EndoIII | 1.08 | 1.17 | 1.28 | 1.45 | - | - | - | - | |
2156 | 0015 | Endo IV | 1.13 | 0.7 | 0.78 | 0.74 | 1.01 | 0.91 | 0.81 | 0.67 | |
2454 | 0544 | EndoV | 1.41 | 1.12 | 1.03 | 0.91 | 1.11 | 1.15 | 1.44 | 1.65 | |
0904 | 1367 | OGG1 | 1.0 | 1.01 | 1.12 | 0.92 | 0.88 | 1.3 | 1.13 | 1.21 | |
2487 | 1260 | OGT | 1.31 | 1.19 | 1.35 | 1.6 | 1.17 | 1.01 | 1.15 | 0.95 | |
2275 | 0159 | UDGaseIV | 1.24 | 0.86 | 1.03 | 0.83 | 1.08 | 0.75 | 0.88 | 0.89 | |
2484 | 1747 | UDGaseVI | 1.15 | 0.85 | 0.94 | 1.07 | 1.11 | 1.4 | 1.66 | 1.55 | |
Chromatin | 0962 | 1321 | Alba1 | 0.87 | 1.11 | 0.73 | 0.95 | 0.91 | 0.96 | 0.91 | 1.0 |
6877 | 1322 | Alba2 | 1.04 | 0.85 | 0.99 | 0.8 | 0.86 | 1.19 | 0.82 | 1.66 | |
9180 | 0064 | SSO7d | 0.49 | 0.57 | 0.35 | 0.6 | - | - | - | - | |
9535 | 0362 | SSO7d | 0.52 | 0.52 | 0.36 | 0.61 | - | - | - | - | |
0420 | 0839 | Rev gyrase rgy1 | 1.43 | 1.09 | 1.0 | 0.8 | 0.99 | 0.91 | 0.66 | 0.55 | |
0963 | * | Rev gyrase rgy2 | 0.95 | 0.81 | 0.98 | 0.76 | 1.37 | 0.99 | 0.58 | 0.53 | |
0969 | 1314 | Topo6A | 0.95 | 0.8 | 1.31 | 1.25 | 0.91 | 0.99 | 0.89 | 0.79 | |
0968 | 1315 | Topo 6B | 1.12 | 0.67 | 2.25 | 1.7 | 1.02 | 0.72 | 0.64 | 0.53 | |
0907 | 1371 | Topo 1 | 1.16 | 1.0 | 1.37 | 1.09 | 1.04 | 1.48 | 3.56 | 4.1 | |
2478 | 0381 | Sir2 | 1.13 | 1.2 | 1.34 | 1.77 | 1.16 | 1.37 | 1.62 | 1.52 | |
2813 | 2284 | Pat | 1.17 | 0.93 | 1.07 | 1.14 | 0.97 | 1.0 | 1.38 | 1.55 | |
Transcription | 0280 | 0665 | TFB3 | 1.11 | 2.82 | 8.26 | 8.03 | 2.32 | 4.08 | 7.05 | 6.95 |
0946 | 1341 | TFB2 | 0.61 | 0.33 | 0.42 | 0.46 | 1.04 | 0.83 | 0.4 | 0.4 | |
0446 | 0866 | TFB1 | 0.97 | 1.29 | 1.75 | 1.7 | 0.94 | 1.29 | 1.06 | 1.12 | |
0291 | 0171 | TFS | 1.08 | 1.45 | 1.01 | 1.16 | - | - | - | - | |
Oxidative stress | 2078 | 1820 | Nramp | 1.42 | 3.03 | 4.55 | 4.76 | 1.02 | 1.58 | 4.79 | 6.57 |
2079 | 1821 | Dps | 0.95 | 1.69 | 4.67 | 5.6 | 1.03 | 1.6 | 4.53 | 6.47 | |
2080 | 1822 | Rieske | 0.96 | 1.08 | 1.68 | 1.69 | 1.17 | 1.32 | 4.63 | 5.46 | |
1503 | 1170 | MsrA | 0.82 | 1.22 | 1.28 | 1.46 | 2.02 | 1.97 | 2.27 | 1.96 | |
Early induced | 2364 | 0975 | SSB | 2.28 | 1.24 | 1.07 | 0.95 | 1.81 | 1.91 | 0.82 | 0.98 |
2374 | 0965 | RIO kinase | 2.81 | 1.05 | 1.00 | 1.08 | 1.41 | 1.04 | 0.84 | 0.85 | |
1127 | 0334 | HdrC-1 | 2.66 | 1.76 | 1.84 | 1.78 | 1.60 | 2.02 | 2.30 | 2.04 | |
1129 | 0329 | HdrB-1 | 2.65 | 1.32 | 1.57 | 1.28 | 1.55 | 1.83 | 1.77 | 1.76 | |
1131 | 0328 | HdrA | 2.23 | 1.71 | 2.17 | 2.04 | 1.66 | 1.56 | 1.95 | 1.59 | |
1134 | 0326 | HdrC-2 | 2.13 | 1.06 | 1.36 | 1.12 | 1.08 | 1.26 | 0.82 | 1.25 | |
1135 | 0325 | HdrB-2 | 2.39 | 1.36 | 1.25 | 1.31 | 0.98 | 1.33 | 1.57 | 2.21 | |
3201 | 1202 | Sulfite oxidase | 2.27 | 1.10 | 0.80 | 0.84 | 1.36 | 1.21 | 1.02 | 0.76 | |
2261 | 0331 | Sulfide oxidored | 7.64 | 1.57 | 1.33 | 1.15 | 0.87 | 1.25 | 1.17 | 1.15 | |
2905 | 0821 | CrtB | 2.57 | 1.66 | 1.17 | 1.26 | 1.17 | 1.10 | 0.85 | 0.95 | |
2906 | 0822 | CrtZ | 2.31 | 1.57 | 1.13 | 0.96 | - | - | - | - | |
Hypothetical | 2395 | 0951 | 0.98 | 1.73 | 10.0 | 12.8 | 0.95 | 2.95 | 9.83 | 10.8 | |
0691 | 0568 | 1.28 | 3.02 | 9.76 | 12.5 | - | - | - | - | ||
3146 | 0568 | 0.27 | 1.13 | 2.86 | 3.50 | - | - | - | - | ||
0037 | 1302 | 1.30 | 1.37 | 6.94 | 6.99 | 0.94 | 2.53 | 1.48 | 7.48 | ||
0283 | 0667 | 1.42 | 1.40 | 4.98 | 4.67 | 1.18 | 2.65 | 3.87 | 2.46 |