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Table 6 The variable genomic regions in strain 8004

From: Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris

XVR

Chromosomal coordinates

CDSs

Length

GC

δ* value (×1,000)

XVR01

76036-80668

XC0061-XC0065 (5)

4,633

54.31

98.553

XVR02†

159333-170981

XC0128-XC0136 (8)

11,649

57.19

62.146

XVR03

269007-274301

XC0223-XC0225 (3)

5,295

57.89

51.416

XVR04

402049-414813

XC0341-XC0355 (15)

12,765

56.94

103.820

XVR05

562624-571104

XC0475-XC0480 (6)

8,481

55.55

101.685

XVR06

705062-714579

XC0589-XC0596 (8)

9,518

59.74

57.941

XVR07

1035995-1049889

XC0856-XC0871 (15)

13,895

57.67

56.843

XVR08

1095226-1097524

XC0914-XC0916 (3)

2,299

67.76

100.000

XVR09

1231170-1259018

XC1018-XC1042 (22)

27,849

55.22

91.389

XVR10

1270957-1275001

XC1055-XC1059 (5)

4,045

55.16

100.665

XVR11

1940629-1952343

XC1619-XC1626 (8)

11,715

56.06

80.616

XVR12

1958257-1968956

XC1631-XC1641 (11)

10,700

54.1

72.784

XVR13

2414668-2513025

XC2002-XC2089 (81)

98,358

60.51

77.060

XVR13.1‡

2432933-2490940

XC2020-XC2074 (53)

58,007

62.23

63.589

XVR14

2531325-2543429

XC2106-XC2126 (21)

12,105

60.05

46.543

XVR15

2545133-2569438

XC2128-XC2140 (13)

24,305

63.27

31.640

XVR16

2713064-2720842

XC2254-XC2258 (5)

7,779

64.51

55.837

XVR17†

2759130-2764563

XC2292-XC2295 (4)

5,434

59.26

65.992

XVR18†

2899536-2958586

XC2399-XC2444 (47)

59,051

55.38

109.955

XVR19

3122997-3176917

XC2590-XC2638 (49)

53,921

58.17

113.835

XVR20†

3332308-3356903

XC2774-XC2790 (17)

24,596

58.49

83.425

XVR21

3620451-3629704

XC3026-XC3034 (9)

9,254

61.49

40.074

XVR22

3809655-3818302

XC3180-XC3184 (5)

8,648

58.43

85.752

XVR23

4299842-4315783

XC3619-XC3633 (14)

15,942

56.82

81.182

XVR24

4382229-4384007

XC3695-XC3697 (3)

1,778

49.59

108.993

XVR25

4492839-4498618

XC3799-XC3804 (6)

5,780

57.77

73.882

XVR26

4614209-4631109

XC3908-XC3924 (16)

16,901

58.23

52.313

XVR27†

5009127-5011690

XC4232-XC4234 (3)

2,564

55.97

104.713

  1. †These variable genomic regions (XVRs) are totally absent from the genome of Chinese strains. ‡XVR13.1 denotes that the fragment is a part of XVR13.