From: AceView: a comprehensive cDNA-supported gene and transcripts annotation
Track | Number of models with introns | Consensual models (of 1,556 total) | Sensitivity | Specificity |
---|---|---|---|---|
*AceView | 1,792 | 1,302 | 84% | 73% |
Gencode | 1,691 | 1,255 | 81% | 74% |
*ECgene | 3,851 | 1,198 | 77% | 31% |
AceView | 1,630 | 1,165 | 75% | 71% |
*ExonWalk | 892 | 511 | 33% | 57% |
*Known Gene | 501 | 432 | 28% | 86% |
Exogean | 554 | 404 | 26% | 73% |
*RefSeq | 342 | 332 | 21% | 97% |
Pairagon | 471 | 310 | 20% | 66% |
*Ensembl | 427 | 295 | 19% | 69% |
*MGC | 323 | 217 | 14% | 67% |
Fgenesh | 462 | 217 | 14% | 47% |
*P CCDS | 201 | 152 | 10% | 76% |
UP Jigsaw | 259 | 150 | 10% | 58% |
*U NscanEst | 282 | 104 | 7% | 37% |
UP Augustus | 312 | 100 | 6% | 32% |
P Twinscan | 547 | 77 | 5% | 14% |
UP GeneMark | 551 | 50 | 3% | 9% |
UP SGP2 | 552 | 48 | 3% | 9% |
UP GeneZilla | 477 | 47 | 3% | 10% |
UP ExonHunter | 807 | 41 | 3% | 5% |
UP GeneID | 267 | 38 | 2% | 14% |
*UP GenScan | 395 | 37 | 2% | 9% |
UP Dogfish | 204 | 33 | 2% | 16% |
UP Saga | 331 | 18 | 1% | 5% |