From: BoCaTFBS: a boosted cascade learner to refine the binding sites suggested by ChIP-chip experiments
Transcription factor | Methods | TFBSs detected correctly | ||
---|---|---|---|---|
 |  | Original | IC | Pair IC |
cMyc | PSSM | 234 | 234 | 261 |
 | Centroid | 232 | 236 | 241 |
 | Berg and von Hippel | 245 | 247 | 252 |
 | Consensus | 154 | 219 | 221 |
 | Single boosting | 347 |  |  |
 | BoCaTFBS | 444 |  |  |
Sp1 | PSSM | 86 | 86 | 90 |
 | Centroid | 93 | 93 | 104 |
 | Berg and von Hippel | 107 | 109 | 115 |
 | Consensus | 62 | 68 | 68 |
 | Single boosting | 119 |  |  |
 | BoCaTFBS | 123 |  |  |
P53 | PSSM | 16 | 17 | 29 |
 | Centroid | 15 | 15 | 23 |
 | Berg and von Hippel | 16 | 19 | 29 |
 | Consensus | 7 | 12 | 17 |
 | Single boosting | 30 |  |  |
 | BoCaTFBS | 35 |  |  |