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Table 3 Gene pairs exceeding quantiles

From: Searching for differentially expressed gene combinations

 

Colon: G/S

Colon: O/O

BRCA1: G/S

BRCA1: O/O

Quantile

#

o/e

#

o/e

#

o/e

#

o/e

0

1,446

-

0

-

7

-

4

-

10-6

2,204

1.1·103

1

5.0·10-1

45

1.3.101

8

2.3·100

10-5

5,917

3.0·102

11

5.5·10-1

444

1.3.101

69

2.0·100

10-4

11,260

5.6·101

167

8.4·10-1

2,473

7.0.100

584

1.7·100

10-3

22,701

1.1·101

1,924

9.6·10-1

12488

3.6.100

5,063

1.4·100

  1. The number of gene pairs (#) that exceed a given quantile of the permutation distribution in the data for colon and BRCA1, along with the ratio of observed versus expected (o/e) number of gene pairs exceeding this threshold. The abbreviations G/S and O/O refer to the scoring function: G/S, gap/substitution scenario; O/O, on/off scoring situation.
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Genome Biology

ISSN: 1474-760X

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