| DGCr1 | DGCr2 | Total |
---|---|---|---|
Clones that encode complete ORFs | Â | Â | Â |
   ORFs identical to the Release 3 predicted proteins* | 3,429 | 1,946 | 5,375 |
   ORFs with 1-2% differences to Release 3 proteins†| 235 | 306 | 541 |
Total | 3,664 | 2,252 | 5,916 |
Clones known to be compromised‡ |  |  |  |
   Nucleotide discrepancies | 485 | 829 | 1314 |
   5' short | 618 | 150 | 768 |
   3' truncated | 57 | 26 | 83 |
   Co-ligated inserts | 23 | 54 | 77 |
   ORFs with less than 50 amino acids | 49 | 21 | 70 |
   Antisense transcripts | 53 | 58 | 111 |
   Transposable elements | 12 | 9 | 21 |
   Bacterial contaminants | 2 | 4 | 6 |
Total | 1,299 | 1,151 | 2,450 |
Clones that may represent alternative transcripts§ |  |  |  |
   5' short with upstream in-frame stop codon | 32 | 4 | 36 |
   3' truncated with downstream in-frame stop codon | 55 | 17 | 72 |
   Putative missed micro-exon in Release 3 annotation | 23 | 7 | 30 |
Total | 110 | 28 | 138 |
Unclassified clones¶ | 257 | 160 | 417 |