Table 1 Ordering of BACs sequences by blasting with long cDNAs to the human genome sequences (htgs)
From: Assembling and gap filling of unordered genome sequences through gene checking
cDNAs and Acc. No | Length (bp) | Exon sequences homologous to BACs sequences (bp) | Acc. No., length (bp) and ordering of BACs (denoted by first as 1,Second as 2, and so on) | Chromosome$ |
|---|---|---|---|---|
Sea Urchin β-DYNEIN | 13799 | (2143-9465) | AC073102.1, 197994bp (1) | 7 |
(9228-12323) | AAC004002.1, 112314bp (2) | |||
RERE protein (AB036737) | 8035 | (3-492) | AC025240.3, 170048bp (1) | 1 |
(491-1467) | AC021953.3, 169752bp (2) | |||
(1158-1921) | AL096855.26,177246bp (3) | |||
(1834-8018) | AC016049.2, 198254bp (4) | |||
KIAA0603 (NM_014832) | 5922 | (118-2380) | AL139230.7, 217520bp (1) | 13 |
(842-5922) | AC011164.4, 183577bp (2) | |||
(1516-5922) | AL162571.4, 184953bp (3) | |||
KIAA0570 (NM_014709) | 5842 | (64-3895) | AC073568.1, 138091bp (1) | 2 |
(120-4205) | AC016894.4, 164561bp (2) | |||
(2576-5843) | AC018889.2, 174186bp (3) | |||
KIAA0535 (NM_014682) | 6183 | (1-720) | AC009995.4, 158883bp(1) | 8 |
(650-3047)* | AC021915.1, 51198bp (2) | |||
(3129-6183) | AC023536.1, 50388bp (*4) | |||
RalGPS1A (NM_014636) | 6336 | (1-484)* | AL160169.2, 145953bp(1) | 9 |
(565-875)* | AL356862.2, 132794bp(*3) | |||
(1015-6336) | AL354705.3, 165901bp(*5) | |||
KIAA0294 (NM_014629) | 8467 | (1-5983) | AF236876.2, 113733bp(1) | 8 |
(5206-8467) | AF170801.2, 131032bp(2) | |||
(RATMIBP1)(D37951) | 9731 | (1-368)* | AL355307.2, 206594bp(1) | 6 |
(615-9731) | AL136122.3, 131255bp(*3) |